Calificación Moto3 - Gran Premio de Aragón 2016
| Pos. | Piloto | Equipo | Moto | Tiempo |
|---|---|---|---|---|
| 1 | 
Enea Bastianini |
Gresini Racing Moto3 | Honda | 1:58.293 |
| 2 | 
Jorge Navarro |
Estrella Galicia 0,0 | Honda | +0.213 |
| 3 | 
Livio Loi |
RW Racing GP BV | Honda | +0.228 |
| 4 | 
Gabriel Rodrigo |
RBA Racing Team | KTM | +0.299 |
| 5 |
Arón Canet |
Estrella Galicia 0,0 | Honda | +0.465 |
| 6 | 
Philipp Oettl |
Schedl GP Racing | KTM | +0.494 |
| 7 | 
Brad Binder |
Red Bull KTM Ajo | KTM | +0.548 |
| 8 | 
Fabio Quartararo |
Leopard Racing | KTM | +0.636 |
| 9 | 
Hiroki Ono |
Honda Team Asia | Honda | +0.650 |
| 10 | 
Bo Bendsneyder |
Red Bull KTM Ajo | KTM | +0.685 |
| 11 |
Adrián Martín |
MAPFRE Team MAHINDRA | Mahindra | +0.739 |
| 12 |
Lorenzo Dalla Porta |
SKY Racing Team VR46 | KTM | +0.753 |
| 13 |
Fabio Di Giannantonio |
Gresini Racing Moto3 | Honda | +0.790 |
| 14 |
Andrea Migno |
SKY Racing Team VR46 | KTM | +0.794 |
| 15 |
Juanfran Guevara |
RBA Racing Team | KTM | +0.833 |
| 16 |
Andrea Locatelli |
Leopard Racing | KTM | +0.859 |
| 17 | 
John Mcphee |
SaxoPrint RTG | Peugeot | +0.896 |
| 18 |
Nicolo Bulega |
SKY Racing Team VR46 | KTM | +0.971 |
| 19 |
Niccolo Antonelli |
Ongetta-Rivacold | Honda | +1.033 |
| 20 |
Jules Danilo |
Ongetta-Rivacold | Honda | +1.055 |
| 21 |
Francesco Bagnaia |
ASPAR Mahindra Team Moto3 | Mahindra | +1.078 |
| 22 |
Albert Arenas |
Peugeot MC Saxo | Albert Arenas | +1.102 |
| 23 | 
Khairul Idham Pawi |
Honda Team Asia | Honda | +1.113 |
| 24 |
María Herrera |
Team Laglisse | Honda | +1.271 |
| 25 |
Tatsuki Suzuki |
CIP | Mahindra | +1.381 |
| 26 | 
Jakub Kornfeil |
Drive M7 SIC Racing Team | Honda | +1.412 |
| 27 |
Joan Mir |
Leopard Racing | KTM | +1.502 |
| 28 |
Darryn Binder |
Platinum Bay Real Estate | Mahindra | +1.555 |
| 29 |
Marcos Ramírez |
Platinum Bay Real Estate | Mahindra | +1.754 |
| 30 |
Adam Norrodin |
Drive M7 SIC Racing Team | Honda | +2.313 |
| 31 |
Fabio Spiranelli |
CIP | Mahindra | +2.657 |
| 32 |
Stefano Valtulini |
3570 Team Italia | Stefano Valtulini | +2.832 |
| 33 |
Lorenzo Petrarca |
3570 Team Italia | Stefano Valtulini | +3.375 |
| 34 | 
Gabriel Martínez-Abrego |
Motomex Team Worldwide Race | Mahindra | +5.335 |