Calificación Moto3 - Gran Premio de Japón 2013
| Pos. | Piloto | Equipo | Moto | Tiempo |
|---|---|---|---|---|
| 1 | 
Alex Rins |
Estrella Galicia 0,0 | KTM | 2:09.387 |
| 2 |
Maverick Viñales |
Team Calvo | KTM | +0.923 |
| 3 |
Álex Márquez |
Estrella Galicia 0,0 | KTM | +0.926 |
| 4 |
Luis Salom |
Red Bull KTM Ajo | KTM | +1.269 |
| 5 | 
Jack Miller |
Caretta Technology - RTG | FTR Honda | +1.284 |
| 6 |
Isaac Viñales |
Bimbo-Ongetta-Centro Seta | FTR Honda | +1.494 |
| 7 | 
Niccolo Antonelli |
GO&FUN Gresini Moto3 | FTR Honda | +1.624 |
| 8 | 
Hiroki Ono |
Honda Team Asia | Honda | +1.670 |
| 9 | 
Jonas Folger |
Mapfre Aspar Team Moto3 | Kalex KTM | +1.836 |
| 10 |
Sena Yamada |
Team Plus One & Endurance | Honda | +2.131 |
| 11 | 
Jasper Iwema |
RW Racing GP | Kalex KTM | +2.257 |
| 12 |
Kazuki Watanabe |
La Fonte Tascaracing | Honda | +2.332 |
| 13 | 
Zulfahmi Khairuddin |
Red Bull KTM Ajo | KTM | +2.406 |
| 14 |
Toni Finsterbusch |
Kiefer Racing | Kalex KTM | +2.567 |
| 15 | 
Brad Binder |
Ambrogio Racing | Suter Honda | +2.586 |
| 16 | 
Jakub Kornfeil |
Redox RW Racing GP | Kalex KTM | +2.703 |
| 17 | 
Niklas Ajo |
Avant Tecno | KTM | +2.849 |
| 18 | 
Miguel Oliveira |
Mahindra Racing | Mahindra | +2.900 |
| 19 |
Arthur Sissis |
Red Bull KTM Ajo | KTM | +2.948 |
| 20 | 
Alexis Masbou |
Ongetta-Rivacold | FTR Honda | +2.988 |
| 21 |
Efrén Vazquez |
Mahindra Racing | Mahindra | +2.995 |
| 22 | 
John Mcphee |
Caretta Technology - RTG | FTR Honda | +3.081 |
| 23 |
Luca Gruenwald |
Kiefer Racing | Kalex KTM | +3.158 |
| 24 |
Lorenzo Baldassarri |
GO&FUN Gresini Moto3 | FTR Honda | +3.190 |
| 25 | 
Livio Loi |
Marc VDS Racing Team | Kalex KTM | +3.208 |
| 26 |
Romano Fenati |
San Carlo Team Italia | FTR Honda | +3.806 |
| 27 |
Alan Techer |
CIP Moto3 | TSR Honda | +4.512 |
| 28 |
Hafiq Azmi |
La Fonte Tascaracing | Honda | +4.620 |
| 29 |
Luca Amato |
Mahindra Spiel-Kiste | Mahindra | +4.630 |
| 30 |
Matteo Ferrari |
Ongetta-Centro Seta | FTR Honda | +4.792 |
| 31 | 
Eric Granado |
Mapfre Aspar Team Moto3 | Kalex KTM | +5.319 |
| 32 |
Philipp Oettl |
Paddock TT Motion Events | Kalex KTM | +7.277 |
| 33 |
Juanfran Guevara |
CIP Moto3 | TSR Honda | +8.051 |
| 34 |
Francesco Bagnaia |
San Carlo Team Italia | FTR Honda | +8.679 |
| 35 |
Ana Carrasco |
Team Calvo | KTM | +9.344 |